Detailed information of SNP:
|
SNP ID:
sf1014948080(Gbrowse)
Chromosome: chr10 Position: 14948080 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 93.54% | 6.46% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 486 | 82.51% | 17.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 95.12% | 4.88% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1014948080 | C->T | INTERGENIC | None |