Detailed information of SNP:
|
SNP ID:
sf1015077097(Gbrowse)
Chromosome: chr10 Position: 15077097 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 86.11% | 13.89% |
| All Indica | 792 | 76.39% | 23.61% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 371 | 61.46% | 38.54% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015077097 | A->G | INTERGENIC | None |