Detailed information of SNP:
|
SNP ID:
sf1015110464(Gbrowse)
Chromosome: chr10 Position: 15110464 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 87.46% | 12.54% |
| All Indica | 792 | 86.74% | 13.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 63 | 12.70% | 87.30% |
| Indica I | 369 | 82.66% | 17.34% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015110464 | A->G | INTERGENIC | None |