Detailed information of SNP:
|
SNP ID:
sf1015111324(Gbrowse)
Chromosome: chr10 Position: 15111324 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 87.91% | 12.09% |
| All Indica | 791 | 86.35% | 13.65% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 12.70% | 87.30% |
| Indica I | 368 | 82.34% | 17.66% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015111324 | G->A | INTERGENIC | None |