Detailed information of SNP:
|
SNP ID:
sf1015132803(Gbrowse)
Chromosome: chr10 Position: 15132803 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 96.65% | 3.35% |
| All Indica | 761 | 95.01% | 4.99% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 357 | 96.08% | 3.92% |
| Indica II | 206 | 94.17% | 5.83% |
| Indica Intermediate | 198 | 93.94% | 6.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015132803 | A->C | INTERGENIC | None |