Detailed information of SNP:
|
SNP ID:
sf1015139337(Gbrowse)
Chromosome: chr10 Position: 15139337 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 57.44% | 42.56% |
| All Indica | 761 | 88.44% | 11.56% |
| All Japonica | 494 | 3.44% | 96.56% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 351 | 85.75% | 14.25% |
| Indica II | 208 | 88.46% | 11.54% |
| Indica Intermediate | 202 | 93.07% | 6.93% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015139337 | T->C | INTERGENIC | None |