Detailed information of SNP:
|
SNP ID:
sf1015348330(Gbrowse)
Chromosome: chr10 Position: 15348330 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 91.46% | 8.54% |
| All Indica | 765 | 86.93% | 13.07% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 356 | 88.48% | 11.52% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015348330 | T->A | LOC_Os10g29650(LOC_Os10g29650.2) | INTRON |
| sf1015348330 | T->A | LOC_Os10g29650(LOC_Os10g29650.3) | UTR_5_PRIME |
| sf1015348330 | T->A | LOC_Os10g29650(LOC_Os10g29650.1) | INTRON |