Detailed information of SNP:
|
SNP ID:
sf1015388864(Gbrowse)
Chromosome: chr10 Position: 15388864 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.33% | 47.67% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015388864 | C->T | INTERGENIC | None |