Detailed information of SNP:
|
SNP ID:
sf1015430812(Gbrowse)
Chromosome: chr10 Position: 15430812 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 53.71% | 46.29% |
| All Indica | 767 | 92.18% | 7.82% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 57 | 5.26% | 94.74% |
| Indica I | 345 | 88.12% | 11.88% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015430812 | T->A | INTERGENIC | None |