Detailed information of SNP:
|
SNP ID:
sf1015460379(Gbrowse)
Chromosome: chr10 Position: 15460379 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1208 | 89.16% | 10.84% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 296 | 57.09% | 42.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 215 | 44.19% | 55.81% |
| Tropical Japonica | 45 | 97.78% | 2.22% |
| Japonica Intermediate | 36 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015460379 | T->C | INTERGENIC | None |