Detailed information of SNP:



SNP ID: sf1015494628(Gbrowse)

Chromosome: chr10

Position: 15494628
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 98.65% 1.35%
All Indica794 97.86% 2.14%
All Japonica496 99.80% 0.20%
Aus67 98.51% 1.49%
Indica I372 96.77% 3.23%
Indica II212 99.53% 0.47%
Indica Intermediate210 98.10% 1.90%
Temperate Japonica334 99.70% 0.30%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1015494628 C->T INTERGENIC None