Detailed information of SNP:
|
SNP ID:
sf1015585901(Gbrowse)
Chromosome: chr10 Position: 15585901 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 57.43% | 42.57% |
| All Indica | 797 | 86.20% | 13.80% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015585901 | A->G | INTERGENIC | None |