Detailed information of SNP:
|
SNP ID:
sf1015591435(Gbrowse)
Chromosome: chr10 Position: 15591435 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 65.65% | 34.35% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 491 | 5.09% | 94.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 331 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015591435 | T->C | INTERGENIC | None |