Detailed information of SNP:
|
SNP ID:
sf1015600636(Gbrowse)
Chromosome: chr10 Position: 15600636 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 95.02% | 4.98% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 409 | 84.60% | 15.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 97.70% | 2.30% |
| Tropical Japonica | 61 | 26.23% | 73.77% |
| Japonica Intermediate | 44 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015600636 | C->T | INTERGENIC | None |