Detailed information of SNP:
|
SNP ID:
sf1015708759(Gbrowse)
Chromosome: chr10 Position: 15708759 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 88.64% | 11.36% |
| All Indica | 694 | 78.82% | 21.18% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 322 | 72.05% | 27.95% |
| Indica II | 186 | 93.55% | 6.45% |
| Indica Intermediate | 186 | 75.81% | 24.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015708759 | C->T | INTERGENIC | None |