Detailed information of SNP:
|
SNP ID:
sf1015724292(Gbrowse)
Chromosome: chr10 Position: 15724292 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.73% | 26.27% |
| All Indica | 798 | 90.73% | 9.27% |
| All Japonica | 497 | 57.34% | 42.66% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015724292 | T->C | INTERGENIC | None |