Detailed information of SNP:
|
SNP ID:
sf1015761986(Gbrowse)
Chromosome: chr10 Position: 15761986 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 95.18% | 4.82% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 490 | 86.53% | 13.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 89.79% | 10.21% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015761986 | T->C | INTERGENIC | None |