Detailed information of SNP:
|
SNP ID:
sf1015762021(Gbrowse)
Chromosome: chr10 Position: 15762021 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 95.19% | 4.81% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 473 | 86.47% | 13.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 88.20% | 11.80% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 59 | 69.49% | 30.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015762021 | C->T | INTERGENIC | None |