Detailed information of SNP:
|
SNP ID:
sf1015795205(Gbrowse)
Chromosome: chr10 Position: 15795205 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.07% | 46.93% |
| All Indica | 799 | 38.92% | 61.08% |
| All Japonica | 493 | 84.58% | 15.42% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 27.20% | 72.80% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015795205 | C->T | LOC_Os10g30510(LOC_Os10g30510.1) | Non-Synonymous SNP |