Detailed information of SNP:
|
SNP ID:
sf1015799969(Gbrowse)
Chromosome: chr10 Position: 15799969 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1360 | 97.35% | 2.65% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 441 | 92.97% | 7.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 46 | 43.48% | 56.52% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015799969 | C->T | LOC_Os10g30520(LOC_Os10g30520.1) | INTRON |