Detailed information of SNP:
|
SNP ID:
sf1015806163(Gbrowse)
Chromosome: chr10 Position: 15806163 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1157 | 71.91% | 28.09% |
| All Indica | 601 | 48.59% | 51.41% |
| All Japonica | 442 | 98.87% | 1.13% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 287 | 36.59% | 63.41% |
| Indica II | 170 | 55.88% | 44.12% |
| Indica Intermediate | 144 | 63.89% | 36.11% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 44 | 97.73% | 2.27% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015806163 | A->T | INTERGENIC | None |