Detailed information of SNP:
|
SNP ID:
sf1015810473(Gbrowse)
Chromosome: chr10 Position: 15810473 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.32% | 37.68% |
| All Indica | 793 | 84.99% | 15.01% |
| All Japonica | 496 | 21.57% | 78.43% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 86.52% | 13.48% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015810473 | T->C | INTERGENIC | None |