Detailed information of SNP:
|
SNP ID:
sf1015834826(Gbrowse)
Chromosome: chr10 Position: 15834826 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1363 | 93.47% | 6.53% |
| All Indica | 790 | 97.59% | 2.41% |
| All Japonica | 453 | 85.21% | 14.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 322 | 98.14% | 1.86% |
| Tropical Japonica | 80 | 30.00% | 70.00% |
| Japonica Intermediate | 51 | 90.20% | 9.80% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015834826 | T->C | INTERGENIC | None |