Detailed information of SNP:
|
SNP ID:
sf1015913923(Gbrowse)
Chromosome: chr10 Position: 15913923 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 54.92% | 45.08% |
| All Indica | 764 | 29.97% | 70.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 361 | 19.39% | 80.61% |
| Indica II | 199 | 30.65% | 69.35% |
| Indica Intermediate | 204 | 48.04% | 51.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015913923 | C->T | LOC_Os10g30690(LOC_Os10g30690.1) | INTRON |