Detailed information of SNP:
|
SNP ID:
sf1015914144(Gbrowse)
Chromosome: chr10 Position: 15914144 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 96.39% | 3.61% |
| All Indica | 795 | 99.25% | 0.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 36.51% | 63.49% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015914144 | C->T | LOC_Os10g30690(LOC_Os10g30690.1) | INTRON |