Detailed information of SNP:
|
SNP ID:
sf1015984913(Gbrowse)
Chromosome: chr10 Position: 15984913 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 94.54% | 5.46% |
| All Indica | 796 | 94.97% | 5.03% |
| All Japonica | 455 | 92.97% | 7.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 59 | 47.46% | 52.54% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1015984913 | C->T | LOC_Os10g30826(LOC_Os10g30826.1) | Non-Synonymous SNP |