Detailed information of SNP:
|
SNP ID:
sf1016124471(Gbrowse)
Chromosome: chr10 Position: 16124471 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 68.75% | 31.25% |
| All Indica | 762 | 95.80% | 4.20% |
| All Japonica | 495 | 22.02% | 77.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 366 | 96.72% | 3.28% |
| Indica II | 204 | 95.59% | 4.41% |
| Indica Intermediate | 192 | 94.27% | 5.73% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016124471 | A->G | INTERGENIC | None |