Detailed information of SNP:
|
SNP ID:
sf1016154282(Gbrowse)
Chromosome: chr10 Position: 16154282 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.53% | 7.47% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 81.49% | 18.51% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016154282 | T->A | LOC_Os10g31040(LOC_Os10g31040.5) | UTR_5_PRIME |
| sf1016154282 | T->A | LOC_Os10g31040(LOC_Os10g31040.1) | UTR_5_PRIME |