Detailed information of SNP:
|
SNP ID:
sf1016156689(Gbrowse)
Chromosome: chr10 Position: 16156689 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.37% | 36.63% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016156689 | A->G | LOC_Os10g31040(LOC_Os10g31040.5) | INTRON |
| sf1016156689 | A->G | LOC_Os10g31040(LOC_Os10g31040.1) | INTRON |