Detailed information of SNP:
|
SNP ID:
sf1016157339(Gbrowse)
Chromosome: chr10 Position: 16157339 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 70.41% | 29.59% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016157339 | T->C | LOC_Os10g31040(LOC_Os10g31040.5) | INTRON |
| sf1016157339 | T->C | LOC_Os10g31040(LOC_Os10g31040.1) | INTRON |