Detailed information of SNP:
|
SNP ID:
sf1016157346(Gbrowse)
Chromosome: chr10 Position: 16157346 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 63.37% | 36.63% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016157346 | G->A | LOC_Os10g31040(LOC_Os10g31040.5) | INTRON |
| sf1016157346 | G->A | LOC_Os10g31040(LOC_Os10g31040.1) | INTRON |