Detailed information of SNP:
|
SNP ID:
sf1016157367(Gbrowse)
Chromosome: chr10 Position: 16157367 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 70.98% | 29.02% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 495 | 23.03% | 76.97% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016157367 | C->T | LOC_Os10g31040(LOC_Os10g31040.5) | INTRON |
| sf1016157367 | C->T | LOC_Os10g31040(LOC_Os10g31040.1) | INTRON |