Detailed information of SNP:
|
SNP ID:
sf1016175210(Gbrowse)
Chromosome: chr10 Position: 16175210 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.68% | 9.32% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 494 | 78.74% | 21.26% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016175210 | C->T | LOC_Os10g31060(LOC_Os10g31060.1) | INTRON |