Detailed information of SNP:
|
SNP ID:
sf1016191484(Gbrowse)
Chromosome: chr10 Position: 16191484 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 79.12% | 20.88% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 41.96% | 58.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 18.86% | 81.14% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016191484 | A->C | LOC_Os10g31080(LOC_Os10g31080.1) | INTRON |