Detailed information of SNP:
|
SNP ID:
sf1016195952(Gbrowse)
Chromosome: chr10 Position: 16195952 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 78.98% | 21.02% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 41.67% | 58.33% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 18.86% | 81.14% |
| Tropical Japonica | 90 | 97.78% | 2.22% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016195952 | A->C | LOC_Os10g31080(LOC_Os10g31080.1) | INTRON |