Detailed information of SNP:
|
SNP ID:
sf1016210456(Gbrowse)
Chromosome: chr10 Position: 16210456 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 60.44% | 39.56% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 492 | 17.89% | 82.11% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 90 | 37.78% | 62.22% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016210456 | G->A | INTERGENIC | None |