Detailed information of SNP:
|
SNP ID:
sf1016223298(Gbrowse)
Chromosome: chr10 Position: 16223298 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 65.91% | 34.09% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 485 | 33.81% | 66.19% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 15.11% | 84.89% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016223298 | T->A | INTERGENIC | None |