Detailed information of SNP:
|
SNP ID:
sf1016239634(Gbrowse)
Chromosome: chr10 Position: 16239634 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.00% | 29.00% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 493 | 21.70% | 78.30% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016239634 | T->C | INTERGENIC | None |