Detailed information of SNP:
|
SNP ID:
sf1016252534(Gbrowse)
Chromosome: chr10 Position: 16252534 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.37% | 24.63% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 496 | 61.29% | 38.71% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 93 | 8.60% | 91.40% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016252534 | C->A | LOC_Os10g31170(LOC_Os10g31170.1) | INTRON |