Detailed information of SNP:
|
SNP ID:
sf1016267832(Gbrowse)
Chromosome: chr10 Position: 16267832 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 96.69% | 3.31% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 472 | 91.53% | 8.47% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 94.06% | 5.94% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 59 | 66.10% | 33.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016267832 | T->C | LOC_Os10g31180(LOC_Os10g31180.1) | INTRON |