Detailed information of SNP:
|
SNP ID:
sf1016278193(Gbrowse)
Chromosome: chr10 Position: 16278193 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 96.60% | 3.40% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 441 | 90.70% | 9.30% |
| Aus | 61 | 96.72% | 3.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 91.72% | 8.28% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 47 | 68.09% | 31.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016278193 | T->C | INTERGENIC | None |