Detailed information of SNP:
|
SNP ID:
sf1016284723(Gbrowse)
Chromosome: chr10 Position: 16284723 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 89.01% | 10.99% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016284723 | A->G | INTERGENIC | None |