Detailed information of SNP:
|
SNP ID:
sf1016292107(Gbrowse)
Chromosome: chr10 Position: 16292107 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.36% | 20.64% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 497 | 43.06% | 56.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 19.70% | 80.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016292107 | T->C | INTERGENIC | None |