Detailed information of SNP:
|
SNP ID:
sf1016319606(Gbrowse)
Chromosome: chr10 Position: 16319606 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 66.57% | 33.43% |
| All Indica | 795 | 97.99% | 2.01% |
| All Japonica | 488 | 11.07% | 88.93% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 85 | 45.88% | 54.12% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016319606 | G->A | LOC_Os10g31250(LOC_Os10g31250.1) | INTRON |