Detailed information of SNP:
|
SNP ID:
sf1016321855(Gbrowse)
Chromosome: chr10 Position: 16321855 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 68.02% | 31.98% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 486 | 10.91% | 89.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 83 | 45.78% | 54.22% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016321855 | G->C | LOC_Os10g31250(LOC_Os10g31250.1) | Non-Synonymous SNP |