Detailed information of SNP:
SNP ID:
sf1016321855(Gbrowse)
Chromosome: chr10 Position: 16321855 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1407 | 68.02% | 31.98% |
All Indica | 798 | 99.37% | 0.63% |
All Japonica | 486 | 10.91% | 89.09% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 212 | 100.00% | 0.00% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 83 | 45.78% | 54.22% |
Japonica Intermediate | 68 | 17.65% | 82.35% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1016321855 | G->C | LOC_Os10g31250(LOC_Os10g31250.1) | Non-Synonymous SNP |