Detailed information of SNP:
|
SNP ID:
sf1016324004(Gbrowse)
Chromosome: chr10 Position: 16324004 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 74.36% | 25.64% |
| All Indica | 758 | 94.99% | 5.01% |
| All Japonica | 489 | 37.42% | 62.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 95.38% | 4.62% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 87 | 80.46% | 19.54% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016324004 | T->C | INTERGENIC | None |