Detailed information of SNP:
|
SNP ID:
sf1016354490(Gbrowse)
Chromosome: chr10 Position: 16354490 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 54.16% | 45.84% |
| All Indica | 797 | 32.62% | 67.38% |
| All Japonica | 474 | 82.91% | 17.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 30.93% | 69.07% |
| Indica II | 212 | 17.45% | 82.55% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 73 | 12.33% | 87.67% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016354490 | C->T | INTERGENIC | None |