Detailed information of SNP:
|
SNP ID:
sf1016357409(Gbrowse)
Chromosome: chr10 Position: 16357409 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.25% | 18.75% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016357409 | G->T | INTERGENIC | None |