Detailed information of SNP:
|
SNP ID:
sf1016358151(Gbrowse)
Chromosome: chr10 Position: 16358151 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 796 | 85.80% | 14.20% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 80.21% | 19.79% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016358151 | G->A | LOC_Os10g31330(LOC_Os10g31330.1) | Synonymous |
| sf1016358151 | G->A | LOC_Os10g31330(LOC_Os10g31330.3) | Synonymous |
| sf1016358151 | G->A | LOC_Os10g31330(LOC_Os10g31330.6) | Synonymous |
| sf1016358151 | G->A | LOC_Os10g31330(LOC_Os10g31330.2) | Synonymous |
| sf1016358151 | G->A | LOC_Os10g31330(LOC_Os10g31330.5) | Synonymous |