Detailed information of SNP:
|
SNP ID:
sf1016358223(Gbrowse)
Chromosome: chr10 Position: 16358223 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 98.23% | 1.77% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016358223 | A->G | LOC_Os10g31330(LOC_Os10g31330.1) | Synonymous |
| sf1016358223 | A->G | LOC_Os10g31330(LOC_Os10g31330.3) | INTRON |
| sf1016358223 | A->G | LOC_Os10g31330(LOC_Os10g31330.6) | Synonymous |
| sf1016358223 | A->G | LOC_Os10g31330(LOC_Os10g31330.2) | Synonymous |
| sf1016358223 | A->G | LOC_Os10g31330(LOC_Os10g31330.5) | Synonymous |